Infrared absorption spectroscopy of a single polyatomic molecular ion

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Absorption spectroscopy is one of the most fundamental methods to investigate light–matter interaction and has long been accepted as a standard method1. Usually, the fraction of the transmitted light is measured, which reveals quantities such as the absolute absorption cross section5,6. Measuring the fraction of absorbed light becomes difficult when investigating a single atom or molecule, as fluctuations and the inherent quantum noise of light often dominate the signal2,3. Nevertheless, there have been several demonstrations of detecting the absorption of light in a single atom or molecule with visible light7,8,9. These experiments are performed with a large number of photons being absorbed by the atom or molecule to produce a sufficient absorption signal and require efficient and low-noise photon detectors that are not available for a large part of the electromagnetic spectrum.

For molecular ions that repel each other, it is difficult to obtain a dense sample for performing efficient absorption spectroscopy and often requires techniques that are applicable to single molecules. Thus, it is common to investigate molecular ions through the secondary actions that occur when the molecule absorbs light, such as photodissociation10,11,12, charge transfer13, fragmentation14 and inelastic collisions15,16. In contrast to these methods, which often perturb the molecular state or even destroy the molecular ions, recent efforts have been made to use quantum logic spectroscopy for detecting the state of the molecular ion by a co-trapped atomic ion in a non-destructive fashion17,18,19,20. Quantum logic spectroscopy enables spectroscopy on intramolecular transitions by monitoring the state of the system and its changes due to interaction with light18,21. So far, these experiments are limited to molecular species with relatively simple internal structure and are predominantly applied to diatomic molecules.

We use the same principle of quantum logic spectroscopy, probing the light–molecule interaction by a co-trapped atom, but we choose to detect photon absorption events directly using the recoil that a single absorbed photon exerts on the molecule. This detection technique is known as recoil spectroscopy and has been applied to study atomic transitions4,22. Similar to traditional quantum logic spectroscopy experiments, the molecular ion is co-trapped with an atomic ion on which the recoil can be read out, as shown in Fig. 1. The recoil is transferred onto the atom by the Coulomb interaction, which couples the external motion of both trapped ions. The quantum state of the motion of the atom can then be mapped onto its electronic states and read out using quantum information processing techniques23.

Fig. 1: Schematic of the system of a trapped two-ion mixed-species crystal for performing molecular spectroscopy.

The system is considered here to possess three degrees of freedom: a harmonic oscillator describing the in-phase motion of the crystal, a two-level system in the atomic ion for quantum logic operations and the intramolecular vibration.

Usually, the recoil of a single photon is so small that its effect on the motion of the atom cannot be measured straightforwardly for reasonable experimental parameters. However, it is possible to amplify the signal of such a recoil by exploiting non-classical states of motion of both ions. For instance, it has been shown that preparing the motion in a so-called ‘Schrödinger cat’ state enables the detection of photon absorption4. A sketch of the measurement procedure is shown in Fig. 2. So far, this method has only been demonstrated on atomic transitions in which the collective recoil of multiple photon absorption and emission events was measured4. In this work, we demonstrate the first implementation of this method for detecting single-photon absorption on a molecular ion.

Fig. 2: Cat-state spectroscopy for detecting the photon absorption recoil.

Sequence diagram of the cat-state spectroscopy for detecting the photon absorption recoil on the molecule (left) and the evolution of the motional wavepacket of the ion crystal in-phase space (right). The procedure consists of the following steps: initial ground-state cooling of the ion motion, generation of the recoil-sensitive cat state, excitation of the molecular transition, reversal of the cat-state generation operation and the detection of the photon absorption recoil on the atomic ion. This process generates entanglement between the atomic qubit and the motion of the ion crystal, such that the signal of single-photon absorption recoil is amplified and transformed into a geometric phase shown by the shaded area. This is then mapped to the state of the atomic ion, which can be detected by fluorescence.

Photon absorption detection

To illustrate the absorption detection method, we consider an atomic and a molecular ion co-trapped in a Paul trap, in which we aim to detect photon absorption on the molecular ion. Regardless of the nature of the molecular transition, the excitation is detected based on its influence on the motion of the two ions. We can thus describe the detection method with the internal state of the atomic ion and the combined motional state of the ion crystal. The internal state of the atom is modelled by a two-level system with energy eigenstates |↑⟩ and |↓⟩, which can be manipulated and read out by applying laser pulses23. It is convenient to describe the motional states of the two ions by their collective motional modes that arise because of the Coulomb interaction. In our case, the relevant collective motion is given by a single-mode harmonic oscillator with its general state in the Fock state basis \({\varPsi }_{z}={\sum }_{n}{c}_{n}|n\rangle \). In particular, we target the axial in-phase mode of the mixed-species two-ion crystal24.

We first introduce the dynamics of a single-photon absorption event in this system. Momentum conservation dictates that the absorption of a single photon not only excites a molecular transition but also transfers momentum from the photon onto the molecule. In an ion trap, this momentum transfer can be described by applying a displacement operator \(\hat{D}({\rm{i}}{\eta }_{{\rm{m}}})\) (ref. 25). The magnitude of this displacement is given by the corresponding Lamb–Dicke parameter of the molecular transition:

$${\eta }_{{\rm{m}}}=\sqrt{\frac{\hbar }{2{M}_{{\rm{m}}}{\omega }_{z}}}{k}_{z,{\rm{m}}}{e}_{z,{\rm{m}}},$$

(1)

where Mm is the molecular mass, ωz is the motional frequency of the in-phase mode, \({k}_{z,{\rm{m}}}\) is the wavevector component of the light exciting the molecular transition along the motional axis, and \({e}_{z,{\rm{m}}}\) is the participation factor of the molecular ion in the in-phase mode24.

We consider first the case in which the motion is initially prepared in its ground state, which is displaced into a coherent state with amplitude ηm due to the recoil. For molecular transitions in the optical and infrared regime, this displacement magnitude is usually of the order of 10−2. We can thus approximate the displaced motional state with \({\varPsi }_{z}=|0\rangle +{\rm{i}}{\eta }_{{\rm{m}}}{{\rm{e}}}^{-{\rm{i}}{\omega }_{z}t}|1\rangle \) as ηm ≪ 1, where t is the timing between the photon absorption event and the detection. The most efficient method for detecting this displacement directly is a phase-sensitive measurement that maps the motional state onto the basis states of the atom, followed by a measurement in the atomic \({\hat{\sigma }}_{y}\) basis4. When varying the timing of the photon absorption event, this measurement yields a sinusoidal signal with peak-to-peak contrast \({S}_{\mathrm{direct}}({\eta }_{{\rm{m}}})=2{\eta }_{{\rm{m}}}\). In practice, this signal is too small to be measured with confidence because of fundamental and technical noise of the experiment, such as quantum projection noise and imperfect motional ground state cooling.

A more efficient way of detecting the displacement is to prepare the motional state of the ion crystal in a non-classical state before the absorption event, as shown in Fig. 2. This is done by applying a bichromatic light field to the atomic and motional ground state that causes a state-dependent force on the ions (see Methods, Cat-state engineering). It generates entanglement between the in-phase motion of the crystal and the atomic qubit state. The resulting state is known as a cat state:

$${\varPsi }_{{\rm{cat}}}=\frac{1}{\sqrt{2}}(|+\rangle |\alpha \rangle +|-\rangle |-\alpha \rangle ),$$

(2)

where \(|\pm \rangle =(|\uparrow \rangle \pm |\downarrow \rangle )/\sqrt{2}\) and \(|\pm \alpha \rangle \) is a motional coherent state of complex amplitude ±α (ref. 26). Although |α| is referred to as the amplitude of the cat state, the argument of α can be interpreted as the phase of the cat state, which is controlled by the relative phase ϕ− between the two frequency components of the bichromatic laser field.

A single-photon absorption event then acts as a displacement on this cat state. This displacement can be mapped onto the electronic state of the atom by inverting the dynamics of the cat-state generation process, which is implemented by altering the phases of bichromatic light. The state after the displacement and the inverse cat-state dynamics becomes

$$\begin{array}{l}{\varPsi }^{{\prime} }\,=\,\frac{1}{\sqrt{2}}(|+\rangle {{\rm{e}}}^{{\rm{i}}\varPhi }+|-\rangle {{\rm{e}}}^{-{\rm{i}}\varPhi })\otimes |{\rm{i}}{\eta }_{{\rm{m}}}\rangle \\ \,=\,(|\uparrow \rangle \cos \varPhi +|\downarrow \rangle \sin \varPhi )\otimes |{\rm{i}}{\eta }_{{\rm{m}}}\rangle ,\end{array}$$

(3)

where the rotation angle of the atomic electronic state Φ = 2ηmRe(α) reflects the amplification of the recoil. The amplification depends on Re(α), which is determined by the phase difference between the cat state and the displacement operator from the photon absorption recoil. The phase of the cat state is controlled by ϕ−, whereas the phase of the displacement operator is determined by the relative timing of the photon absorption event and the generation of the cat state. In our experiment, we chose to vary Re(α) between −|α| and |α| by changing ϕ−, while keeping the timing of the photon absorption fixed (see Methods, ‘Experimental imperfections’).

Overall, an experimental sequence consists of cat-state generation, photon absorption and the reversal of cat-state generation. After this sequence, the displacement from the absorption event can be related to an atomic excitation to |↓⟩, which can be detected with a maximum probability of \(\sin {(2{\eta }_{{\rm{m}}}|\alpha |)}^{2}\). In the regime of ηmRe(α) ≪ 1, it is advantageous to evaluate the atomic excitation in the \({\widehat{\sigma }}_{y}\) basis by adding an extra \({\hat{R}}_{x}({\rm{\pi }}/2)\) operation on the atom before detection. We define the measured signal in this case to be the peak-to-peak amplitude in the atomic excitation as we vary ϕ−:

$${\mathcal{S}}({\eta }_{{\rm{m}}})=\sin (4{\eta }_{{\rm{m}}}| \alpha | ),$$

(4)

which is the expected signal from a noiseless experiment.

We implemented this technique experimentally on a two-ion crystal of one 40Ca+ ion and one 40CaOH+ ion, which is generated by leaking in water vapour27,28, as described in Methods, ‘Molecule generation’. To analyse the effect of imperfections in the experiment on this method (mainly due to atomic and motional decoherence), we emulate the absorption event by a displacement caused by an electric force on the ion crystal. To implement a displacement with a controlled magnitude, we apply a series of nkick short electric kick pulses. They are temporally separated by the oscillation period of the in-phase motion of the ion crystal such that they add up coherently to a displacement \(\hat{D}(\eta ={n}_{{\rm{kick}}}{\eta }_{k})\) on the motional state of the crystal. Here, ηk is the displacement magnitude from a single kick pulse, which is set to 0.0193(2) to be comparable with the expected recoil of a mid-infrared photon absorption event.

The sensitivity of the generated cat states can then be tested with these electric impulses by varying the phase ϕ− and measuring the atomic excitation in the \({\hat{\sigma }}_{y}\) basis. This yields a sinusoidal signal as shown in Fig. 3a, which shows the measured signals for a cat-state amplitude of |α| = 6.5(7) when applying a single kick and applying no kick. The signal is smaller than what is expected from equation (4) because of experimental imperfections. We quantify the effect of the imperfections on the achievable signal for various cat-state amplitudes |α| as shown in Fig. 3b. In a noiseless experiment, the signal should increase with larger |α| according to equation (4), but the actual signal measured at large |α| is limited by atomic and motional decoherence. This behaviour is expected as the experiment duration and the sensitivity to noise increase with the amplitude of the cat state, as shown in simulations of the experiment detailed in Methods, ‘Experimental imperfections’. To reach the maximum detection efficiency, we operate our spectroscopy measurements with |α| = 6.5(7). We model experimental imperfections by introducing a correction factor \({{\mathcal{S}}}_{\max }\) that reduces the measured signal expected from equation (4):

$$S(\eta )={S}_{{\rm{m}}{\rm{a}}{\rm{x}}}\sin (4\eta |\alpha |),$$

(5)

where Fig. 3c shows results for \({{\mathcal{S}}}_{\max }=0.52(3)\), which will be used in the following analysis.

Fig. 3: Characterization of the cat-state spectroscopy on an electric-kick-induced displacement.

a, Measured atomic excitation signal as a function of the bichromatic light phase ϕ− with |α| = 6.5(7) on the displacement of ηk = 0.0193(2) for nkick = 1 (blue) as well as the background signal for nkick = 0 (orange) due to quantum projection noise. Error bars are 1 s.d. due to quantum projection noise. b, Variation of the signal with respect to cat-state amplitude |α| for a fixed displacement, as compared with theory based on the measured atomic and motional coherence (purple; see Methods, ‘Experimental imperfections’). Error bars are 1 s.d. from the least-squares fit covariance. c, The signal measured with |α| = 6.5(7) for electric displacements with various magnitudes η, as compared with theory based on the measured atomic and motional coherence in purple and a simple heuristic model in blue. The theoretically achievable contrast from a direct measurement is indicated in the grey-shaded region.

The measured contrast can be directly converted to a value that is relevant for absorption spectroscopy: the photon absorption probability. For probing typical molecular vibrational transitions, we assume that the molecule absorbs no more than one photon throughout the sequence and that no spontaneous decay occurs during this period. With this, we can extract an effective photon absorption probability from the measured signal \({\mathcal{S}}\) and the signal expected from absorbing a photon at the probe wavelength \({\mathcal{S}}({\eta }_{{\rm{m}}})\) given by equation (5):

$${\widetilde{p}}_{\mathrm{abs}}={\mathcal{S}}/{\mathcal{S}}({\eta }_{{\rm{m}}}).$$

(6)

In the following, we demonstrate vibrational spectroscopy on the molecule using this effective single-photon absorption probability as a figure of merit.

Molecular spectroscopy

We now characterize a molecular vibrational transition in CaOH+ using the cat-state detection method. In particular, we address the vibrational transition between the ground and first excited state of the O–H stretching mode. This transition is predicted at ν0 = 3,783 cm−1 and should be infrared active, based on ab initio calculations (details in Methods, ‘Quantum-chemical calculations’), which corresponds to ηm ≈ 0.03. We expect that the equilibrium state of this internal vibration is effectively the ground state, as the molecule should thermalize to its ambient temperature29. Repeated application of the spectroscopy sequence should not change this equilibrium distribution as the time between excitation events is long compared with the radiative lifetime of the excited state, estimated as 2.8 ms. Owing to the rotational substructure within the target vibrational transition, the excitation dynamics are also influenced by the thermal distribution of the rotational states. However, the molecule is excited with a femtosecond laser that has a bandwidth that cannot resolve the individual rotational lines. Therefore, our modelling of the molecule–laser interaction does not consider the rotational substructure and consists of only the two lowest energy vibrational states.

To achieve a significant excitation probability, we apply multiple laser pulses in a train consisting of up to 34 pulses. Similar to the electric impulses described above, the timing of the laser pulses is synchronized with the external motion of the ion crystal. We fulfil this by setting the in-phase motional frequency of the ion crystal to ωz/2π = 4 ⋅ frep, where frep = 100 kHz is the repetition rate of the laser pulses, as shownin Fig. 4b.

Fig. 4: Absorption spectroscopy of the O–H stretching mode of CaOH+.

a, The effective photon absorption probability from the cat-state spectroscopy measured at ν = 3,703 cm−1 with different laser pulse number npulse (red) and the results from a Monte Carlo simulation (purple). b, Schematic of the pulse sequence triggered on the femtosecond laser pulse train. c, An example of the detected atomic excitation variation (npulse = 34) in the measurement from which the peak-to-peak amplitude \({\mathcal{S}}\) is obtained. d, Absorption spectrum measured with cat-state spectroscopy (red dots), along with the expected spectrum from simulation (purple dots). The value for the transition frequency from ab initio theory is indicated (purple line).

At a laser centre frequency of ν = 3,703.3(2) cm−1, we achieve a photon absorption signal of \({\mathcal{S}}=0.12(1)\) after applying npulse = 34 pulses, as shown in Fig. 4c. This cat-state spectroscopy signal can then be converted into an effective photon absorption probability. As shown in Fig. 4a, we measured the photon absorption probability at the same laser centre frequency as a function of the number of laser pulses. This allows us to compare the experimental data to a simple theoretical model with no free parameters, which predicts the absorption probability to saturate to 0.5 because of the random orientation of the molecule and dephasing (Methods, ‘Molecular excitation dynamics’).

A spectrum of the O–H stretching transition measured with this technique is shown in Fig. 4d. These measurements are performed by varying the centre frequency of the laser between 3,600 cm−1 and 4,000 cm−1 and applying a train of 34 laser pulses. It is observed that the centre of the absorption peak is close to the value of ν0 = 3,783 cm−1 from ab initio calculations and that the width of the simulated absorption peak matches the measured spectrum. However, the model fails to explain the absolute magnitude of the measured effective photon absorption probability.

The comparison of the experiment with the model indicates that the model captures the qualitative features but does not fully explain the observed dynamics and spectral structure. We plan to advance both the experimental and theoretical analysis further to develop a more accurate model for the obtained photon absorption spectrum. In particular, we aim to increase the spectroscopy laser intensity to reach appreciable excitation probability with a single laser pulse. This will facilitate a more sophisticated theoretical modelling of the coherence of the molecule–light interaction and will enable precise measurement of the transition properties.

In the presented experiments, we chose to use broadband femtosecond laser pulses to drive the molecular transition to be insensitive to the rotational state distribution. Our implementation can be naturally extended to pump–probe experiments investigating intramolecular dynamics at ultrafast timescales30. We also expect that this method can be a useful tool for high-precision spectroscopy. A high spectral resolution can be reached by a pulse train originating from a narrow linewidth laser with the repetition period being an integer multiple of the oscillation period of the ions and a pulse duration that is shorter than the oscillation period of the ions. This enables a coherent momentum kick that can be detected with the cat state while probing the transition at a linewidth that is limited by Fourier transform of the pulse train. This interaction is equivalent to a high-precision interrogation of a transition with a frequency comb, which has been demonstrated in atoms and molecules21. Performing high-precision spectroscopy on complex molecules will require state preparation to reach an appreciable signal-to-noise ratio. We anticipate that recoil detection with spectrally shaped laser sources in combination with traditional quantum logic methods19 can provide powerful tools to enable this state preparation.

Our experiments demonstrate and characterize a method to detect single-photon absorption events on a single molecular ion, which is an important step towards realizing non-destructive quantum state detection measurements in a wide class of molecular ions. With large-enough amplification of the recoil signal, we can realize the detection of a single-photon absorption event directly as an atomic excitation in a single shot. Furthermore, other methods to increase the detection sensitivity of the photon recoil exist31,32,33 and might also be beneficial for realizing single-shot measurements. With selective single-shot measurement in an effective three-level system, the recoil detection can enable non-destructive measurements on two of the states34,35, as discussed in the Methods, ‘Non-destructive state detection’. These selective single-shot measurements are also key for measurement-based molecular state preparation and readout, which are crucial ingredients in the development of quantum technologies with molecular ions29,36,37.

The method presented in this study can be applied to any molecular transition that produces a momentum kick of sufficient magnitude based on equation (1). With our set of parameters, the method should be able to detect photon absorption events on transitions with a frequency down to 2,000 cm−1. The transitions considered in the discussion here are limited to vibrational transitions in which the radiative lifetime of the excited states are much longer than time to create the cat state. If this is not the case, the momentum kick has also a diffusive part that reduces the achievable detection efficiency4, which applies to dipole allowed transitions in the visible and ultraviolet part of the spectrum.

Methods

Molecule generation

Our experiment is performed on a mixed-species two-ion crystal consisting of 40Ca+ and 40CaOH+ confined in a linear Paul trap28. To form such a crystal, we first load two 40Ca+ ions and then leak in water vapour with a leak valve from a gas chamber that contains mainly water vapour with a pressure of around 10−6 mbar. In the process, we apply 397 nm laser that drives the 42S1/2 → 42P1/2 dipole transition in 40Ca+ to cool the ion crystal and monitor the fluorescence from 40Ca+ ions with a camera. As the molecule does not fluoresce, the generation of a molecular ion leads to one of the ions turning dark on the camera. When this is observed, we switch off the leak valve and perform mass spectrometry on the dark ion by measuring the motional frequency of the ion crystal24 to verify the generation of CaOH+. In general, it takes around 5 min to form a molecule. After closing the valve, the pressure in the vacuum chamber returns to around 10−10 mbar within a few minutes.

After generating the mixed-species ion crystal, background gas collisions occur, leading to the atomic and molecular ions swapping positions on the timescale of several seconds. For cat-state spectroscopy measurements, we work with only one of the two-ion crystal configurations because the two configurations exhibit different motional frequencies. This is probably due to imperfect micromotion compensation24. We detect the ion crystal configuration during Doppler cooling before the spectroscopy sequence and attempt to alter the configuration randomly if the wrong configuration is detected. This is done by displacing the ion crystal radially from its trapping position. We repeat this procedure until the ions return to the correct configuration.

Cat-state engineering

The non-classical motional state for probing photon recoil is generated by a bichromatic laser beam applied to the 40Ca+ ion. The two frequency components of equal intensity in the bichromatic beam are detuned by −ωz and +ωz from the atomic quadrupole transition between |↑⟩ and |↓⟩, with ωz being the in-phase motional frequency of the ion crystal4. The Lamb–Dicke parameter of this quadrupole transition in the experiment is given by

$${\eta }_{{\rm{a}}}=\sqrt{\frac{\hbar }{2{M}_{{\rm{a}}}{\omega }_{z}}}{k}_{z,{\rm{a}}}{e}_{z,{\rm{a}}},$$

(7)

where Ma is the atomic mass, \({k}_{z,{\rm{a}}}\) is the wavevector component of the quadrupole transition laser along the trap axis, and \({e}_{z,{\rm{a}}}\) is the participation factor of the atomic ion in the in-phase mode. In the Lamb–Dicke regime, the light–ion interaction Hamiltonian can be written as38

$${\hat{H}}_{{\rm{int}}}=\hbar {\eta }_{{\rm{a}}}\frac{{\varOmega }_{0}}{2}({\hat{\sigma }}_{+}\hat{a}{{\rm{e}}}^{{\rm{i}}{\phi }_{{\rm{r}}}}+{\hat{\sigma }}_{+}{\hat{a}}^{\dagger }{{\rm{e}}}^{{\rm{i}}{\phi }_{{\rm{b}}}}+\text{h.c.}),$$

(8)

where Ω0 is the Rabi frequency, \({\hat{a}}^{\dagger }\) is the creation operator and \(\hat{a}\) is the annihilation operator of the harmonic oscillator describing in-phase motion, ϕr and ϕb are the phases of the frequency components with detuning −ωz and +ωz, respectively, in the light field, and h.c. is Hermitian conjugate. This corresponds to a spin-dependent displacement characterized by ϕ± = (ϕb ± ϕr)/2, given by

$$\begin{array}{l}{\hat{H}}_{{\rm{int}}}=\hbar {\eta }_{{\rm{a}}}\frac{{\varOmega }_{0}}{2}({\hat{\sigma }}_{x}\cos {\phi }_{+}-{\hat{\sigma }}_{y}\sin {\phi }_{+})\\ \,\,\,\left[{\rm{i}}(-\hat{a}+{\hat{a}}^{\dagger })\sin {\phi }_{-}+(\hat{a}+{\hat{a}}^{\dagger })\cos {\phi }_{-}\right].\end{array}$$

(9)

Considering ϕ+ = 0, the interaction can be expressed as

$${\hat{H}}_{{\rm{int}}}=\hbar {\eta }_{{\rm{a}}}\frac{{\varOmega }_{0}}{2}{\hat{\sigma }}_{x}(\hat{a}{{\rm{e}}}^{-{\rm{i}}{\phi }_{-}}+{\hat{a}}^{\dagger }{{\rm{e}}}^{{\rm{i}}{\phi }_{-}}).$$

(10)

This leads to opposite motional displacements of \(\widehat{D}(\alpha )\) and \(\widehat{D}(-\alpha )\) with \(\alpha =-{\rm{i}}{\eta }_{{\rm{a}}}{\varOmega }_{0}T{{\rm{e}}}^{{\rm{i}}{\phi }_{-}}/2\) for the two \({\hat{\sigma }}_{x}\) eigenstates |±⟩ for a given pulse duration T.

The generated state is thus a superposition of two wavepackets with different atomic states shown in equation (2). By applying the interaction with ϕ+ = π for the same duration, the two wavepackets can be combined again with the inverted spin-dependent displacement. Momentum recoil due to photon absorption is timed to occur between the generation and reversal of the cat state. This leads to a geometric phase difference accumulated between the two wavepackets, which is then detected by measuring the atomic state as shown in equation (3).

Experimental imperfections

Experimental imperfections are described by a physically motivated model, including atomic and motional decoherence, which, in our case, results from fluctuations of the magnetic field and trap voltages, respectively. We simulate the cat-state photon absorption detection using Lindblad master equations, in which we include the two decoherence channels as collapse operators:

$${\hat{C}}_{{\rm{spin}}}=\sqrt{\frac{1}{2{T}_{{\rm{spin}}}}}{\hat{\sigma }}_{z},\,{\hat{C}}_{{\rm{motion}}}=\sqrt{\frac{2}{{T}_{{\rm{motion}}}}}{\hat{a}}^{\dagger }\hat{a}$$

(11)

where Tspin is the coherence time of atomic two-level system and Tmotion is the coherence time of a superposition of the motional ground state and the first excited state. We estimated Tspin = 2.8(3) ms and \({T}_{\mathrm{motion}}=8{5}_{-35}^{+98}\,\mathrm{ms}\), with Ramsey experiments at the time scale of the measurement. The motional coherence time is much longer than the duration of a cat-spectroscopy experiment, which causes the large uncertainty on the estimated value. With these values, we can predict the signal produced by the experiment with various cat-state amplitudes and various kick sizes, as shown in Fig. 3. The purple-shaded region indicates the simulation results considering 1 s.d. of the atomic and motional coherence of the system. The dominating effect of these imperfections is a loss in signal amplitude, which we can also model with a simple heuristic model in equation (5) that multiplies the ideal contrast in equation (4) with a factor \({{\mathcal{S}}}_{\max }\). For a cat-state amplitude of |α| = 6.5(7), we determine the value of \({{\mathcal{S}}}_{\max }\) to be 0.52(3) by fitting equation (5) to the experimental data of various kick sizes.

The value of \({{\mathcal{S}}}_{\max }\) shows the effect of decoherence and varies for different cat state amplitudes and different durations of the measurement sequence. When investigating the effective photon absorption probability as a function of the number of femtosecond laser pulse npulse, as presented in Fig. 4a, the variation in npulse leads to the change in the time interval between the generation and the reversal of the cat state. This results in the variation in \({{\mathcal{S}}}_{\max }\) as a function of npulse. We investigated this effect with the electric kick measurement and model it as

$${{\mathcal{S}}}_{\max }(t)={{\mathcal{S}}}_{\max }{{\rm{e}}}^{-t/{\tau }_{d}},$$

(12)

for |α| = 6.5(7), where τd = 0.92(6) ms. We thus adjust the measured signals for different numbers of laser pulses accordingly.

Another potential source of imperfections besides decoherence is the timing jitter of the photon absorption events with respect to the ion crystal motion. The magnitude of the recoil-induced geometric phase difference Φ = 2ηmRe(α) depends on the phase difference between the cat state and the displacement operator from the photon absorption recoil. Therefore, it is influenced by the free evolution time between the generation of the cat state and the photon absorption event Twait. In our case, the photon absorption event is synchronized with the femtosecond laser pulses. To achieve deterministic timing, we trigger the cat-state generation sequence on the periodic femtosecond laser pulses with a timing jitter of less than 10 ns. This jitter is considerably shorter than the oscillation period of the ions and ensures a constant free evolution time Twait during the measurement. Moreover, the values of the trap frequency ωz and the repetition rate of the laser frep influence the phase. We set the trap frequency to be an integer multiple of the repetition rate ωz/2π = 4 ⋅ frep, so that we expect the same Re(α) for photon recoil from each of the femtosecond laser pulses. A variation of the trap frequency or the repetition rate, therefore, results in a varying phase for the signal obtained from each pulse. The variation of ωz/2π is measured to be around 50 Hz, and the fluctuation of frep is identified to be below 10 Hz. The variation in arg(α) is thus less than 3.2 × 10−2 for the maximum Twait and can be neglected.

Quantum-chemical calculations

The vibrational transition frequencies and intensities are calculated ab initio using state-of-the-art quantum-chemical methods. We focus on the observed O–H stretching mode, which forms the most intense spectral band. Initially, an accurate potential energy surface is computed using electronic structure coupled-cluster methods, from which the harmonic frequencies and normal coordinates of the stretching modes are obtained. The resulting best estimate for the O–H harmonic frequency is 3,950 cm−1. Subsequently, we neglect couplings between different normal modes, reducing the multidimensional anharmonic vibrational problem to a set of one-dimensional anharmonic vibrational problems along the normal coordinates. We solve the one-dimensional Schrödinger equation for nuclear motion along the normal coordinate dominated by the O–H stretching using the discrete variable representation method39. The computed vibrational energies and wavefunctions give the fundamental transition frequency of 3,792 cm−1 and oscillator strength of 3.7 × 10−5. Finally, couplings of the fundamental O–H stretching mode with the Ca–O stretching and Ca–O–H bending modes are reintroduced using vibrational second-order perturbation theory (VPT2)40, which lowers the O–H fundamental frequency by 9.5 cm−1 and results in its final value of 3,783 cm−1.

The electronic structure computations use the range of correlation-consistent polarized weighted core–valence orbital basis sets augmented with diffuse functions (aug-cc-pwCVnZ-PP, n = T, Q, 5) (refs. 41,42,43). The 10 core electrons of calcium are replaced by the ECP10MDF effective core potential to account for relativistic effects44. The potential energy surface is obtained using a composite scheme in which the total energy is expressed as the sum of three contributions: (1) the Hartree–Fock mean-field energy; (2) the leading part of the correlation energy obtained using the coupled-cluster method restricted to single, double and noniterative triple excitations (CCSD(T))45; and (3) the contribution from triple excitations in CCSDT neglected by CCSD(T)46. The latter term is computed using a triple-ζ basis set, whereas the first two terms are extrapolated to the complete basis set limit using consecutive basis sets up to quintuple-ζ. The three-point exponential47 and two-point 1/n3 (ref. 48) extrapolation formulas are used for the Hartree–Fock and correlation energies, respectively. The permanent electric dipole moment is calculated using the analytical-derivative technique at the CCSD(T)/aug-cc-pwCV5Z level. Its value for the ground vibrational level is 6.2 D.

The potential energy surface of linear CaOH+ is computed as a function of the Ca–O and O–H bond lengths on a uniform two-dimensional grid with a spacing of 0.002 bohr around the equilibrium geometry28 and interpolated with a natural cubic spline. After determining the normal coordinate, 33 electronic energies are calculated along this coordinate. The VPT2 correction is estimated from anharmonic constants obtained at the CCSD(T)/aug-cc-pwCVTZ level.

All electronic structure and VPT2 calculations are performed with the CFOUR v.2.1 program49.

Molecular excitation dynamics

We model the excitation dynamics of the O–H stretching vibrational transition of CaOH+ in the experiment as follows. The molecule is considered here as a two-level system consisting of the ground and first excited states, |g⟩ and |e⟩. The intensity of the laser pulses applied to the molecule is assumed to have a Gaussian temporal profile with a full width at half maximum (FWHM) pulse duration of \(\tau =2{\tau }_{\sigma }\sqrt{2\mathrm{ln}2}\), where τσ is the 1-sigma pulse duration. The molecule then experiences the following time-dependent electric field:

$${\bf{E}}(t)={{\bf{E}}}_{0}{{\rm{e}}}^{-{t}^{2}/4{\tau }_{\sigma }^{2}}({{\rm{e}}}^{-{\rm{i}}(\omega t-\phi )}+\,\text{c.c.}),$$

(13)

where ω and ϕ are the centre frequency and the phase of the laser and E0, and c.c. is the complex conjugate. The peak electric field strength can be calculated from the average laser intensity Iavg as \({E}_{0}=\sqrt{{I}_{\mathrm{avg}}/({f}_{\mathrm{rep}}\tau \sqrt{{\rm{\pi }}/\mathrm{ln}2}\cdot {\epsilon }_{0}c)}\). The light–molecule interaction can then be described as

$${\hat{H}}_{{\rm{m}}}(t)=-{\bf{d}}\cdot {\bf{E}}(t)={\mu }_{{eg}}E(t)\cos \theta ,$$

(14)

where the transition dipole moment μeg can be related to the oscillator strength as \({\mu }_{eg}=\sqrt{{f}_{eg}\cdot 3\hbar {e}^{2}/{m}_{e}{\omega }_{0}}\) and θ is the angle between the molecular axis and the direction of the polarization of the light field. In the interaction picture under the rotating-wave approximation, the interaction can be described by

$${\hat{H}}_{\,\text{m}}^{\text{I}\,}(t)=\hbar \frac{{\Omega }(t)}{2}(|e\rangle \langle g|{{\rm{e}}}^{{\rm{i}}\phi }+\,\text{h.c.})+\hbar \Delta |g\rangle \langle g|,$$

(15)

where Δ = ω − ω0 is the detuning of the laser from the transition frequency ω0 and Ω(t) is the Rabi rate given by

$$\varOmega (t)=\frac{2{\mu }_{{eg}}{E}_{0}\cos \theta }{\hbar }{{\rm{e}}}^{-{t}^{2}/4{\tau }_{\sigma }^{2}}.$$

(16)

We aim to describe the experimental results using this model with no free parameters with a Monte Carlo simulation of the light–molecule interaction expressed in equation (15). In each trial of the simulation, for each laser pulse in the train, we randomly assign the phase ϕ of the light field, which is not stabilized from pulse to pulse for our laser, and the angle θ, assuming that the molecule is randomly oriented in the experiment. The Rabi rate of a single laser pulse is calculated based on ab initio calculations on the transition frequency and oscillator strength (see section ‘Quantum-chemical calculations’) and the laser parameters described below.

In our setup, the femtosecond laser pulses are produced by an ORPHEUS-HP optical parametric amplifier (OPA) pumped by a CARBIDE-CB5 femtosecond laser, both produced by Light Conversion. The light applied to the ions is linearly polarized in the vertical plane and with our magnetic field geometry, this results in an equal superposition of σ+ and σ− polarizations. The average intensity at the position of the ions is 1.1(1) × 104 W cm−2. The spectrum of the light field is measured with a Redstone OSA305 optical spectrum analyser to determine the centre wavelength and linewidth for each frequency measured in the presented absorption spectrum. We observe absorption lines because of the presence of water vapour in the beam path, but we assume that this does not affect the absorption spectroscopy experiment because of power broadening.

The measurement presented in Fig. 4 is performed with a laser centre frequency of ν = 3,703.3(2) cm−1 and an FWHM linewidth of 126.7(4) cm−1. The simulation is based on these parameters and the assumption that the laser pulses are Fourier-transform-limited with an FWHM pulse duration of 116.2(4) fs. For the absorption spectrum shown in Fig. 4d, the experimental results are compared with the simulation performed with the Fourier-transform-limited pulse durations given by the measured centre frequency and linewidth at each of the OPA wavelength settings.

Non-destructive state detection

Photon absorption detection can provide an effective non-destructive state detection acting on a specific subspace of the molecular degrees of freedom. We sketch an example of such a measurement method, acting on the two lowest states of a vibrational mode in a molecule. Consider the three lowest energy vibrational states |0⟩, |1⟩ and |2⟩. We assume that we have the ability to perform selective operations on these states that can be spectroscopically addressed because the anharmonicity of the molecule yields unique transition frequencies. The proposed technique provides a projective measurement in the {|0⟩, |1⟩} manifold. We assume that the system is in a superposition of the vibrational states, the shared motion and the atom are in their ground state

$$(a|0\rangle +b|1\rangle )\otimes |\downarrow \rangle \otimes {|0\rangle }_{z}.$$

We will then create the cat state using the atom–motion interaction, yielding the atom–motion state

$${|\varPsi \rangle }_{{\rm{cat}}}=\frac{1}{\sqrt{2}}|+\rangle {|\alpha \rangle }_{z}+|-\rangle {|-\alpha \rangle }_{z}.$$

We assume that the cat-state spectroscopy is set up to completely flip the atomic electronic state if a photon absorption has occurred Re(α) = π/(4ηm). The combined state of the molecular, atomic and motional degrees of freedom is then

$$(a|0\rangle +b|1\rangle )\otimes {|\varPsi \rangle }_{{\rm{cat}}}.$$

We then assume that we can perfectly transfer the population from the |1⟩ state to the state |2⟩ with a laser pulse that applies a displacement operator on the motion of the ions:

$$a|0\rangle \otimes {|\varPsi \rangle }_{{\rm{cat}}}+b|2\rangle \otimes \hat{D}({\eta }_{{\rm{m}}}){|\varPsi \rangle }_{{\rm{cat}}}.$$

After reversing the cate state generation, the state is then

$$(a|0\rangle \otimes |\downarrow \rangle +b|2\rangle \otimes |\uparrow \rangle )\otimes {|0\rangle }_{z},$$

representing an entangled state between the molecular vibrational degree of freedom and the electronic state of the atom. A projective measurement on the atomic electronic state will thus also project the molecular state into either |0⟩ or |2⟩. If the state is projected into |2⟩, the population can be brought back to |1⟩, which concludes the method and provides a non-destructive state detection.

Data availability

The data that support the findings of this study are openly available at Zenodo50 (https://doi.org/10.5281/zenodo.19727569).

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Acknowledgements

We thank A. Zhdanov, Z. Liu, F. Wolf and S. Willitsch for their discussions.

Funding

This research was funded by Austrian science fund FWF (10.55776/COE1, 10.55776/PIN3213524), the Austrian Research Promotion Agency (FFG) under the project ‘HDCode’ (FO999921407), and the ERC Horizon 2020 project ERC-2020-STG 948893. This research is funded in part by the Gordon and Betty Moore Foundation through grant GBMF12992. V.Š. was supported by funding from the MEYS of Czech Republic under the project CZ.02.01.01/00/22 008/0004649. M.G. and M.T. acknowledge the National Science Centre, Poland (grant no. 2021/43/B/ST4/03326) for financial support and the high-performance computing infrastructure PLGrid of Poland (HPC centres: ACK Cyfronet AGH) for providing computer facilities and support (computational grant no. PLG/2024/017527). Open access funding provided by University of Innsbruck and Medical University of Innsbruck.

Author information

Authors and Affiliations

  1. Universität Innsbruck, Institut für Experimentalphysik, Innsbruck, Austria

    Zhenlin Wu, Tim Duka, Mariano Isaza-Monsalve, Miriam Kautzky, Andrea Turci, René Nardi, Brandon J. Furey & Philipp Schindler

  2. Department of Optics, Palacký University, Olomouc, Czech Republic

    Vojtěch Švarc & Philipp Schindler

  3. Faculty of Physics, University of Warsaw, Warsaw, Poland

    Marcin Gronowski & Michał Tomza

Authors

  1. Zhenlin Wu
  2. Tim Duka
  3. Mariano Isaza-Monsalve
  4. Miriam Kautzky
  5. Vojtěch Švarc
  6. Andrea Turci
  7. René Nardi
  8. Marcin Gronowski
  9. Michał Tomza
  10. Brandon J. Furey
  11. Philipp Schindler

Contributions

Z.W., B.J.F. and P.S. designed the experiment. Z.W. and T.D. carried out the measurement and analysed the data. Z.W., M.I.-M., A.T., B.J.F., M.K., R.N. and P.S. contributed to the experimental setup. Z.W., V.Š., B.J.F. and P.S. developed the model for explaining the result. M.G. and M.T. performed electronic structure calculations. Z.W., T.D., B.J.F., P.S., M.G. and M.T. contributed to the manuscript. All authors reviewed the manuscript. B.J.F., M.T. and P.S. supervised the project.

Corresponding author

Correspondence to Philipp Schindler.

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Wu, Z., Duka, T., Isaza-Monsalve, M. et al. Infrared absorption spectroscopy of a single polyatomic molecular ion. Nature (2026). https://doi.org/10.1038/s41586-026-10915-8

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